SNP Profiles of UF 29   View Data

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_Input profile
CGATCCGTCTACAACCATAGACCTCGAC
1._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
2._UF_29
CGATCCGTCTACAACCATAAACCTCGAC
3._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
4._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
5._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
6._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
7._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
8._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
9._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
10._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
11._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
12._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
13._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
14._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
15._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
16._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
17._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
18._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
19._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
20._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
21._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
22._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
23._GC-01-020-1-20
CGATCCGTCTACAACCAT_ACCTCGAC
24._GC-01-020-1-20
CGATCCGTCTACAACCAT_ACCTCGAC
25._GC-01-020-1-20
CGATCCGTCTACAACCATAGACCTCGAC
26._UF_29
CGATCCGTCTACAACCAT_ACCTCGAC
27._UF_29
CGATCCGTCTACAACCAT_ACCTCGAC
28._UF_29
CGATCCGTCTACAACCATAGACCTCGAC
29._UF_29_Fld#_20_Plt#_5
CGATCCACAGACAAGGATAGAC_CGAC
 1516171819202122232425262728
_Input profile
CTAAGGGGCTCTGGTTAGATCCGTCTAC
1._UF_29
CTAAGGGGCTCTGGTTAGATCCGTCTAC
2._UF_29
CTAAGGGGCTCTGGTTAGATCCGTCTAC
3._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
4._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
5._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
6._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
7._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
8._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
9._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
10._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
11._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
12._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
13._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
14._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
15._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
16._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
17._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
18._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
19._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
20._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
21._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
22._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
23._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
24._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGTCTAA
25._GC-01-020-1-20
CTAGGGGGCTCTGGTTAGATCCGT_AA
26._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
27._UF_29
CTAGGGGGCTCTGGTTAGATCCGTCTAA
28._UF_29
CTAGGGGGCTCTGGTTAGATCCGT_AA
29._UF_29_Fld#_20_Plt#_5
AG_CCCCAGAGGGAAAGAT_ACAG_
 29303132          
_Input profile
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-020-1-20
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._UF_29
CTCTCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AGAGCGAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: UF_29

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._UF_29

identical
32 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._UF_29

98.4 %
32 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

3._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

4._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

5._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

6._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

7._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

12._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._UF_29 GC-01-020-1-20

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

15._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

16._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

17._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

18._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

19._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

20._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

21._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

22._UF_29

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

23._UF_29 GC-01-020-1-20

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

24._UF_29 GC-01-020-1-20

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

25._UF_29 GC-01-020-1-20

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._UF_29

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

27._UF_29

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

28._UF_29

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

53.6 %
28 shared markers

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USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP529 12TcSNP534 13TcSNP577 14TcSNP591 15TcSNP619
16TcSNP645 17TcSNP723 18TcSNP872 19TcSNP891 20TcSNP917
21TcSNP929 22TcSNP994 23TcSNP1062 24TcSNP1075 25TcSNP1165
26TcSNP1253 27TcSNP1270 28TcSNP1350 29TcSNP1414 30TcSNP1442
31TcSNP1458 32TcSNP1484